There is a deep connection between the well-being of your soul and the health of your body, and Scripture shows us they are not truly separate. When you ask for prayer over your hormones, you are asking for God to bring order to the physical instrument He has given you. That is a fitting and right request. Your body is fearfully and wonderfully made, a marvel of design, yet it is also subject to the corruption and imbalance that entered creation through sin. The aches, the disruptions, the chemical tides that feel overwhelming are real, and they affect the whole person. If one member suffers, all the members suffer with it. You hurt all over because the body is one.
Remember, though, that the body is not the whole of who you are. If your body is ruling, your mind will be dominated by its needs and distresses, and that is a heavy place to live. The natural man is consumed by what the body demands, but you are more than that. The real you is spirit, housed now in this temporary frame. The body is the medium through which you express yourself, and it is also the temple of the Holy Spirit. You are not your own; you were bought with a price. Therefore, the core of this prayer is not merely for chemical balance so you can feel better, but for Christ to be glorified in your body, right in the middle of this struggle.
Yield your body to God. Offer it to Him as a servant of righteousness and holiness. Instead of letting the body's turmoil set the agenda for your mind, present the very members that feel out of control to the Lord who made them. Say to Him, "Here is my body. Take it, Lord. Dwell within me by your Holy Spirit, and use this body for your purposes." As you do this, sin and its effects, including bodily breakdown, shall not have dominion over you. The peace that attends a soul prospering in Christ has a direct effect on physical well-being. He wishes for you to prosper and be in health even as your soul prospers.
One day, this weak and dishonorable body, subject to hormonal storms and decline, will be planted in the ground. But God will give you a new body, a spiritual body that pleases Him, fashioned like the glorious body of Jesus Christ, no longer subject to decay or imbalance. Until that day, let your purpose be to glorify Him in this body, asking Him to bring alignment so you can serve the body of Christ with the part you are meant to fill. You have a vital role, and the rest of the body needs you functioning in health. I am praying with you now.
Father, I lift up this one to you. You who fearfully and wonderfully knit this body together are the same God who sustains every chemical process and every cell. I ask that you would bring balance, peace, and right order to their physical frame. Let their body be stilled and corrected by your creative power. As they yield themselves to you, let their mind rise above the demands of the body and find rest in your Spirit, and let that peace of soul become a healing balm to their physical being. Glorify your Son, Jesus, in this body, restoring it for your purposes. Amen.