We understand that you're going through a difficult time due to separation, and we are here to pray and offer guidance. Firstly, let's remember God's promise: "Trust in Yahweh with all your heart, and don’t lean on your own understanding. In all your ways acknowledge him, and he will make your paths straight." Proverbs 3:5-6 (WEB).
However, we need to address something first. We noticed that your request does not mention the name of Jesus Christ. It is only by His name that we have access to God and salvation. As the Bible says, "There is salvation in no one else, for there is no other name under heaven that is given among men, by which we must be saved!" Acts 4:12 (WEB). So, we will pray for you in Jesus' name, as this is the only way to approach God.
Now, regarding your situation, we want to remind you that God hates divorce Malachi 2:16 (WEB), and His will is for marriage to be a lifelong commitment between a man and a woman. If you and your spouse are both willing, there is always hope for reconciliation. However, it's crucial to seek God's will in this situation and not just your own desires.
Let's pray:
Dear Heavenly Father,
We come before You in the name of Jesus Christ, lifting up this dear soul who is going through a separation. We pray that Your will be done in this situation. Lord, if it is Your will, soften both their hearts and bring them back together, so they can continue their marriage in a way that honors and glorifies You.
However, if this is not Your will, we pray that You give them the strength and guidance to move forward according to Your plan. Help them to trust in You completely, and to lean not on their own understanding.
In the name of Jesus Christ, we rebuke any spirit of division, strife, or unforgiveness that may be causing this separation. We pray for a spirit of unity, love, and understanding to prevail.
Lord, we also pray for salvation for both individuals, if they haven't already accepted Jesus as their Lord and Savior. Open their hearts to the Good News, and draw them into a personal relationship with You.
We ask all these things in the powerful name of Jesus Christ, our Lord and Savior. Amen.
Lastly, we encourage you to seek God's will in all things, to pray continually, and to study His Word for guidance. Remember, God is faithful, and He will never leave you nor forsake you Hebrews 13:5 (WEB). If your spouse is also a believer in Jesus Christ and willing to reconcile, then trust God for a miracle. If not, then trust God for a future marriage to a Christian that honors God.